Chapter Two Hyperlinks — Genome Sequencing and Annotation

www.phrap.org: Laboratory of Phil Green, home of the Phrap, Phred, and Consed programs
www.sciencemag.org/cgi/content/full/291/5507/1304/DC1: "The Sequence of the Human Genome" In Science (2001, 291:1304–1351)
www.ncbi.nlm.nih.gov/dbEST/: Expressed Sequence Tags database
www.h-invitational.jp: H-Invitational Database (H-InvDB): a human gene database
genome.ucsc.edu: UCSC Genome Bioinformatics
bio.cse.psu.edu: Penn State University Center for Comparative Genomics and Bioinformatics
www-gsd.lbl.gov/vista: VISTA: A suite of programs and databases for comparative analysis of genomic sequences
eshadow.dcode.org: eShadow: Evolutionary phylogenetic SHADOWing of closely related species
www.sanger.ac.uk/Software/Rfam/mirna: The miRNA Registry
www.ncbi.nlm.nih.gov/COG: COGs: Phylogenetic classification of proteins encoded in complete genomes
paup.csit.fsu.edu: PAUP: Phylogentic Analysis Using Parsimony (and other methods) software
www.geneontology.org: Gene Ontology Consortium
www.geneontology.org/go.nodes.html: Gene Ontology Consortium's node illustration
www.godatabase.org: AmiGO
biosun1.harvard.edu/complab/gosurfer/: GoSurfer: Analyzes gene sets using gene ontology information
franklin.imgen.bcm.tmc.edu/rho/services/OntologyTraverser: Ontology Traverser at Baylor College of Medicine
panther.appliedbiosystems.com: PANTHER Protein Classification System
www.tigr.org/tdb/tgi/: TIGR Gene Indices

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