• Home

• Purchase
• Request Exam Copy
• Tell a Colleague About This Title

Catalog

• List by Author
• List by Subject Area
• List by Title

Chapter Six Hyperlinks: Integrative Genomics—Hyperlinks

• HMDB - Human Metabolome Database (page 331):
  http://www.hmdb.ca
• Visualization of metabolic pathways (page 331):
  http://biochem.boehringer-mannheim.com/prodinfo_fst.htm?/techserv/metmap.htm
  (Note: This link is no longer active; see ExPASy, Biochemical Pathways - Metabolic Pathways
  http://www.expasy.ch/cgi-bin/show_thumbnails.pl)
• Allen, Allen Brain Atlas of anatomical gene expression in the brain (page 332):
  http://www.brain-map.org
• BRENDA, Comprehensive enzyme information system (page 332):
  http://www.brenda-enzymes.info
• DBD, Transcription factor prediction database (page 332):
  http://www.transcriptionfactor.org
• EcoCyc, Encyclopedia of E. coli genes and metabolism (page 332):
  http://ecocyc.org
• EPD, Eukaryotic Promoter Database (page 332):
  http://www.epd.isb-sib.ch
• ExPASy, Thumbnail sketches of metabolism and cellular biochemistry (page 332):
  http://www.expasy.ch/cgi-bin/search-biochem-index
• GNRF, Gene Expression Atlas of the Genomics Institute of Novartis Research Foundation (page 332):
  http://symatlas.gnf.org/SymAtlas
• GOLD, Genomes Online Database (page 332):
  http://www.genomesonline.org
• JASPAR, Transcription factor binding profile database (page 332):
  http://jaspar.genereg.net
• KEGG, Kyoto Encyclopedia of Genes and Genomes (page 332):
  http://www.genome.ad.jp/kegg/kegg2.html
• LIGAND, Database for enzymes, compounds, and reactions (page 332):
  http://www.genome.ad.jp/dbget/ligand.html
• MetaCyc, Encyclopedia of metabolic pathways (HumanCyc is specialized for humans) (page 332):
  http://metacyc.org and http://humancyc.org
• MIRAGE, Molecular Informatics Resource for the Analysis of Gene Expression (page 332):
  http://www.ifti.org
• Protein Lounge, Databases of protein-protein interactions, pathways, transcription factors, etc. (page 332):
  http://www.proteinlounge.com
  (Note: As of Feb. 2, 2009, this domain was on Google's list of malicious sites, so we are not linking to it here. It is possible that the problem has now been corrected.)
• MIPS, Computational analysis of the Munich Information Center for Protein Sequences (page 332):
  http://mips.gsf.de
• REACTOME, Curated pathway database with advanced query features (page 332):
  http://www.reactome.org
• TRANSFAC, Transcription factor and gene regulatory database (page 332):
  http://www.gene-regulation.com
• TRRD, Transcriptional Regulatory Regions Database (page 332):
  http://www.bionet.nsc.ru/trrd
• UMDDB, University of Minnesota Biocatalysis/Biodegradation Database (page 332): http://umbbd.ahc.umn.edu/index.html (no longer active; see http://umbbd.msi.umn.edu)
• MIPS Mammalian Protein-Protein Interaction Database (page 333):
  http://mips.gsf.de/proj/ppi
• MCA, Metabolic Control Analysis (page 333):
  http://dbkgroup.org/mca_home.htm
• Gepasi 3, Biochemical kinetics simulation software (page 335):
  http://www.gepasi.org
• Ingeneue, Gene network simulation software (page 338):
  http://www.ingeneue.com

Home || Contact Us || Orders/Returns || List by Author
List by Subject Area || List by Title || View Exam Copies Requested